Conference Presentations

Click here for Prof. Mahadevan's Google Scholar page.

  • O. Bulka, S. Dworatzek, J. Webb, R. Mahadevan, E. Edwards, "Dichloromethane degradation by an aerobic microbial community used for chloroform bioremediation", Dehalocon III, virtually held, September 2021.
  • O. Bulka, S. Dworatzek, J. Webb, R. Mahadevan, E. Edwards, "Dichloromethane degradation by an anaerobic microbial community used for chloroform bioremediation", World Microbe Forum, virtually held, June 2021.
  • P. Diep, L. Shen, A.F. Yakunin, V. Papangelakis, R. Mahadevan, "Bioengineered microorganisms for nickel removal", 60th Conference of Metallurgists, virtually held, August 2021.
  • M. Garcia-Benitez, R. Mahadevan, "Role of Membrane Allocation Constraints on E. coli Metabolism", 7th Conference on Constraint-Based Reconstruction and Analysis (COBRA), virtually held, March 2021.
  • E. Harrison, R. Mahadevan, "Computational Design of Microbial Cell Factories for Biomanufacturing", 70th Canadian Chemical Engineering Conference, virtually held, October 2020.
  • E. Harrison, R. Mahadevan, "Design and Technoeconomic Evaluation of Biodiluent Production Process", Suncor Academic Forum, virtually held, October 2020.
  • Y. Liu, A. Khusnutdinova, J. Chen, K. Raj, D. Crisante, E. Harrison, R. Mahadevan, "Green synthesis of bio-diluent in E. coli", Suncor Academic Forum, Virtually held, October 2020.
  • C. Pham, P. Stogios, R. Mahadevan, A. Savchenko, "Computational-Based Directed Evolution of Transcription Factor Biosensor Specificity for Production of Value-Added Chemicals", 70th Canadian Chemical Engineering Conference, virtually held, October 2020.
  • O. Bulka, R. Mahadevan, E. Edwards, "Functional prediction of an environmental Clostridium species for bioremediation", 70th Canadian Chemical Engineering Conference, virtually held, October 2020.
  • M. Garcia-Benitez, R. Mahadevan, "Study of a limited membrane protein allocation and its effect on the metabolism of E. coli", 70th Canadian Chemical Engineering Conference, virtually held, October 2020.
  • A. Mulet Indrayanti, C. Borgström, M.F. Gorwa-Grauslund, R. Mahadevan, "Implementation of kinase-phosphatase cycling for improved xylose utilization in engineered Saccharomyces cerevisiae", 70th Canadian Chemical Engineering Conference, virtually held, October 2020.
  • Y. Liu, A. Khusnutdinova, J. Chen, X. Wang, A.F. Yakunin, R. Mahadevan,"System engineering of Escherichia coli for the production of short length alkane", Metabolic Engineering Summit, Tianjin, China, October 2019.
  • Y. Liu, J. Chen, A. Khusnutdinova, K. Correia, A.F. Yakunin, R. Mahadevan, "A novel C-terminal protein degron identified in bacterial aldehyde decarbonylases using directed enzyme evolution", Enzyme Engineering XXV, Whistler, BC, September 2019.
  • J. Chen, Y. Liu, A. Jo, R. Mahadevan, "One-step efficient genome editing in Acidithiobacillus sp. JAGS via CRISPR/Cas9". Metabolic Engineering Summit, Tianjin, China, October 2019.
  • K. Raj, N. Venayak, R. Mahadevan, "Phenotypic design choices for enhanced two stage microbial production process", Biochemical and Molecular Engineering XXI, Mont Tremblant, QC, July 2019.
  • T. Kim, K. Siddartha, A. Khusnutdinova, R. Mahadevan, A. Yakunin, "Improving 1,3 Butanediol production in E. coli using a protein engineering approach", Biochemical and Molecular Engineering XXI, Mont Tremblant, QC, July 2019.
  • K. Siddartha, K. Nemr, R. Mahadevan, “Evaluating model-driven design methods for improving microbial production of 1,3-butanediol”,  BioCEB Annual AGM, Toronto, Ontario, 2019.
    Toronto.
  • P. Diep, R. Mahadevan, A. Yakunin, "Exploring Microbial Nickel Capture Proteins for Mining and Remediative Applications", 7th Mining and the Environment International Conference, Laurentian University, Sudbury, Ontario, June 2019.
  • Jinjin Chen, R. Mahadevan, "One-step efficient genome editing in Acidithiobacillus ferrooxidans via CRISPR/Cas9", 7th Mining and the Environment International Conference, Laurentian University, Sudbury, Ontario, June 2019
  • K. Raj, N. Venayak, R. Mahadevan, "Phenotypic design choices for enhanced two-stage microbial production processes", Industrial Biocatalysis Network – Annual General Meeting, Vancouver, Canada, June 2019
  • C. Euler, R. Mahadevan, "Functional Topology of the E. coli Small Molecule Regulatory Network", 19th International Conference on Systems Biology (ICSB), Lyon, FR, October 2018.
  • K. Raj, N. Venayak, R. Mahadevan, "Model guided design of transcriptional switches for metabolic engineering", XXIX Interamerican Congress of Chemical Engineering, Toronto, Canada, October 2018.
  • S. Proulx, R. Mahadevan, "Addressing the oxygen incompatibility of the muconic acid pathway for the production of adipic acid", XXIX Interamerican Congress of Chemical Engineering, Toronto, Canada, October 2018.
  • Z. Xu, R. Mahadevan, “Efficient Biochemical Pathway Prediction Using Simulated Annealing", XXIX Interamerican Congress of Chemical Engineering, Toronto, Canada, October 2018.
  • S. Srinivasan, C. Euler, W. Cluett and R. Mahadevan, “Experimental Design for Parameter Estimation in Kinetic Models of Metabolism”. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA)", Seattle, WA, USA, October 2018.
  • K. Correia, and R, Mahadevan, “Metabolic Network Reconstruction for the Pan-Genome: A Scaleable Method to Get High-Quality Metabolic Models across the Tree of Life", 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA), Seattle, WA, USA, October 2018.
  • C. Euler, R. Mahadevan, "Metabolic Supply and Demand Constrain Optimal Regulatory Strategies: Structural Evidence from the E coli Small Molecule Regulatory Network", 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA), Seattle, WA, USA, October 2018.
  • K. Raj, N. Venayak, R. Jaydeep, R. Mahadevan, "An optimized bistable metabolic switch to decouple growth and production states", Metabolic Engineering 12, Munich, Germany, June 2018.
  • K. Correia, Khusnutdinova, A.N., Li, P.Y., Joo, J.C. Brown, B., Yakunin, A.F., Mahadevan, R., “Flux balance analysis predicts NADP phosphatase alleviates the
    cofactor imbalance during xylose fermentation in Scheffersomyces stipitis", Metabolic Engineering 12, Munich, Germany, June 2018.
  • K. Raj, N. Venayak, R. Mahadevan, "Model guided design of transcriptional switches for diverse applications", SEED conference, Scottsdale, AZ, USA, June 2018.
  • R. Choudhary, R. Mahadevan, "Engineering Probiotics to Increase Production of Signalling Peptides in the Gut Microbiome", SEED conference, Scottsdale, AZ, USA, June 2018.
  • K. Raj, S. Partow, A. N. Khusnutdinoval, C. Jo, A. F. Yakunin, R. Mahadevan, "Biocatalytic production of adipic acid from glucose using engineered Saccharomyces cerevisiae", Annual General Meeting (2018), Montreal, Canda, May 2018.
  • R. Mahadevan, "Engineering Fe Oxidizing Bacteria for Bioleaching", Elements of Biomining Annual General Meeting, Sudbury, ON, November 2017.
  • N. Venayak, A. von Kamp, S. Klamt, R. Mahadevan, "Identifying optimal metabolic nodes and intervention strategies for dynamically controlled microorganisms using two stage minimal cut sets", Metabolic Pathway Analysis 2017, Bozeman, USA, July 2017.
  • K. Raj, A. Khusnutdinova, S. Partow, Joo J.C., Yakunin A.F., Mahadevan R. (2017). "Complete Biosynthesis of Adipic Acid in S.cerevisiae". Poster at the Biochemical and Molecular Engineering Conference 2017, July 16-20, Newport Beach, USA.
  • T. Kim, R. Flick, J. Brunzelle, A. Singer, E. Evdokimova, G. Brown, J. C. Joo, G. A. Minasov, W.F. Anderson, R. Mahadevan, A. Savchenko, A.F. Yakunin. (2017). “Structural and Biochemical Studies of Novel Aldo-Keto Reductases (AKRs) for the Biocatalytic Conversion of 3-Hydroxybutanal to 1,3-Butanediol”. Poster at the Biochemical and Molecular Engineering Conference 2017, July 16-20, Newport Beach, USA.
  • A.Pandit., Raj, K., Khusnutdinova, A., Partow, S., Joo, J.C., Yakunin, A.F., Mahadevan, R. (2017). Complete Biosynthesis of Adipic Acid in S.cerevisiae. International Conference on Biomolecular Engineering, Jan 8-11, San Diego, USA.
  • Lucie Semenec, Fumiko Watanabe, Radhakrishnan Mahadevan, Kengo Inoue, Derek Lovley, Ashley E Franks. "Forcing adaptation to reveal novel metabolic pathways: the malic acid bi-cycle of Geobacter sulfurreducens", Feb 2017, Australian Microbial Ecology Conference, Melbourne, Australia.
  • C.E. Euler, R. Mahadevan, “Protein-Level Control of Metabolism: Design Principles and Prospects from a Representative System“, Proceedings of the Foundations in Systems Biology Conference, Magdeburg, Germany, October 2016.
  • Raj, K., Khusnutdinova, A., Mahadevan, R. (2016). Complete Biosynthesis of Adipic Acid in S.cerevisiae. 66th Canadian Chemical Engineering Conference, Oct 16-19, Quebec, Canada. (Oral)
  • K. Correia, L. Xu, P. Li, R. Mahadevan, “Reconstruction of a yeast pan-genome-scale metabolic model for evolutionary systems biology “, Oral Presentation at the European Conference on Biotechnology, July 2016, Krakow, Poland.
  • M. K. Toroghi, W. Cluett, R. Mahadevan, “A Multi-Scale Model of the Whole Human Body based on Dynamic Parsimonious Flux Balance Analysis”, (Invited Keynote Presentation). Proceedings of 11th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, (DYCOPS-CAB 2016), Trondheim, Norway, June 5-8, 2016.
  • A.V. Pandit, R. Mahadevan, “Orthogonal Design of Metabolic Pathways”, Poster Presentation at the Metabolic Engineering Conference –XI, Kobe, Japan, June 2016.
  • S. Partow, P. Hyland, R. Mahadevan, ”Synthetic Rescue Couples NADPH Generation to Metabolite Overproduction in Saccharomyces Cerevisiae” Poster Presentation at the Metabolic Engineering Conference –XI, Kobe, Japan, June 2016.
  • K. Nemr, J Muller, J.C. Joo, P. Gawand, R. Choudhary, N. Venayak, A. Yakunin, R. Mahadevan, “Engineering a Short, Aldolase-Based Pathway for 1,3-Butanediol Production in Escherichia coli”, Poster Presentation at the Metabolic Engineering Conference –XI, Kobe, Japan, June 2016.
  • C. Euler, R. Mahadevan The Need for Speed (and Precision): Protein-Level Control in a Model System, Presentation at the CSChe Quebec-Ontario Quebec-Ontario Biotechnology Meeting, May 2016, Waterloo, Canada.
  • K. Raj, S. Partow, R. Mahadevan, Towards the Complete Biosynthesis of Adipic Acid, Presentation at the Industrial Biocatalysis Network Annual General Meeting (IBN-AGM), May 2016, Montreal, Canada
  • K. Raj, S. Partow, R. Mahadevan, Towards the Complete Biosynthesis of Adipic Acid in Saccharomyces cerevisiae, Presentation at the CSChE Quebec-Ontario Biotechnology Meeting, May 2016, Waterloo, Canada
  • S. Lu, R. Mahadevan, Pathway Prioritization Using Protein Cost, Presentation at the NSERC Industrial Biocatalysis Network (IBN) Annual General Meeting, May 2016, Ontario, Canada.
  • S. Lu, R. Mahadevan, Pathway Prioritization Using Protein Cost, Presentation at the CSCHE Quebec-Ontario Biotechnology Meeting, May 2016, Ontario, Canada.
  • S. Klamt, R. Mahadevan, Feasibility of Growth-Coupled Product Synthesis in Microbial Strains 4th Conference on Constraint-Based Reconstruction and Analysis, Heidelberg, Germany, September 2015.
  • R. Mahadevan, A. von Kamp and S. Klamt, Strain Design with Constrained Regulatory Minimal Cut Sets in Genome-Scale Metabolic Networks, 4th Conference on Constraint-Based Reconstruction and Analysis, Heidelberg, Germany, September 2015.
  • Srinivasan S., Cluett, W. R., Mahadevan, R., Integration and analysis of dynamics of transcriptional regulation and metabolism using kinetic models. Poster at the Foundations of Systems Biology in Engineering Conference (FOSBE), August, 2015, Boston, USA.
  • M. K. Toroghi, W.R. Cluett, R. Mahadevan, Multi-scale modelling of the whole-human body using different integration algorithms, Poster at the Foundations of Systems Biology in Engineering Conference (FOSBE), August 2015, Boston, USA.
  • S. Garg, V.G. Papangelakis, C. Devine, R. Mahadevan, E. Edwards, Bioleaching of pyrrhotite tailings for Ni extraction- insights into an adaptive evolution study. Proceedings of the 54th Annual Conference of Metallurgists, Toronto, ON, August 23- August 26, 2015.
  • S. Klamt, R. Mahadevan, Feasibility of Growth-Coupled Product Synthesis in Microbial Strains, Oral Presentation at Metabolic Pathway Analysis, Braga, Portugal, June 11, 2015.
  • Naveen Venayak, Rohil Jaydeep and Radhakrishnan Mahadevan, Bistable Phenotype Switching to Improve Bioprocess Productivity. Poster at Synthetic Biology: Engineering, Evolution and Design, June 2015, Boston, MA.
  • S. Srinivasan, W.R. Cluett, R. Mahadevan, “Analysis of Multiple Steady States in Integrated Regulatory and Metabolic Networks. Ontario Stats and Control Meeting, May 2015, Toronto, ON.
  • Christopher Gowen, Sarat Cautha, Nicholas Gold, Francois-Xavier Lussier, Radhakrishnan Mahadevan and Vincent Martin, Engineering a Yeast Platform Strain for Industrial Production of Polyketides, November 2014, AIChE Annual Meeting, Atlanta, GA.
  • M. Khaksar Toroghi, W.R. Cluett, R. Mahadevan, Multi-scale modelling of whole-human body, 64th Canadian Chemical Engineering Conference, October 2014, Niagara Falls ,Canada.
  • J. C. Joo, A. Yakunin, R. Flick, A. Khustidanova, and A. Yakunin, Formation of adipic acid by enzymatic reduction of unsaturated six-carbon dicarboxylic acids using 2-enoate reductases. Oral Presentation at the Gordon Research Conference on Biocatalysis, Smithfield, RI, July 6-11, 2014.
  • N. Venayak, K. Ortaleva, M. Scott, and R. Mahadevan, Robustness of genetic circuits. Poster at the Synthetic Biology: Evolution, Engineering, and Design Conference, Manhattan Beach CA, July 14-17 2014.
  • R. Mahadevan, A. von Kamp, and S. Klamt, “Genome-scale strain designs based on regulatory minimal cut sets”, Poster at the Metabolic Engineering Conference –X, Vancouver, Canada, July 19 2014.
  • J. Zhao, L. Kevin, B. Methe and R. Mahadevan. “Genome-scale Reconstruction of Metabolic Networks from Microbial Communities at Sites Undergoing Natural Attenuation of Uranium”. Poster presentation at the US Genomic Science Contractors-Grantees Meeting XII, Washington DC, Feb 10-12, 2014.
  • K. Correia, G. Bhutada, G. Vemuri, T. Jeffries, R. Mahadevan. "Elucidating the xylose metabolism of Scheffersomyces stipitis using integrated ’omics analysis". Poster presentation at FIBRE Conference in Cornwall, ON. May 14-16, 2013.
  • K. Nemr, J.C. Joo, A. Zrehen, P.Hyland, N. Venayak, R. Mahadevan. “Metabolic Engineering Strategies for the Production of Diacids and Diols from Renewable Feedstocks”. Poster presentation at the 63rd Canadian Chemical Engineering Conference, Fredericton NB, Oct 20-23, 2013.
  • K. Nemr, S. Guo, R. Mahadevan. “A Novel Computational Model-Based Metabolic Engineering Strategy for Biofuel and Biochemical Production in Escherichia coli”. Poster presentation at the Advanced Biofuels Symposium 2014, Ottawa ON, May 27-29, 2014.
  • Gawand, P. and Mahadevan, R. D-Ribose production using glucose-xylose co-utilizing Escherichia coli . 4th Annual General Meeting, FIBRE Network, Cornwall, May 13-16, 2013
  • N. Venayak, "Metabolic Engineering to Improve Strains for the Production of Fine Chemicals." Poster presentation at the BioFuelNet Annual General Meeting. Montreal, Canada, June 19-21, 2013.119.
  • K. Nemr, R. Mahadevan. “Leveraging the Power of Microbes to Improving Industrial Efficiency and Sustainibility”. Poster presentation at the Genomics in the Park 2013, Toronto ON, Oct 31, 2013.
  • N. Venayak, N. Anesiadis, R. Mahadevan and W.R. Cluett. “Dynamic switch for improving bioprocess productivity in metabolically engineered strains”, Poster presentation at ICSB 2013, Copenhagen, Aug. 30-Sept. 3, 2013.
  • J. Zhao, R. T. Scheibe, Mahadevan and D. Lovley. “Detailed Modeling of Uranium Mobility Under a Combined Influence of Microbial Activities and Geochemical Transformations”, Poster presentation at the DoE Subsurface Biogeochemical Research 8th PI meeting, Washington DC, May 14-15, 2013.
  • C.M. Gowen, S.C. Cautha, N.D. Gold, F.X, V.J.J. Martin, R. Mahadevan, "Engineering a yeast platform strain for L-tyrosine production." Poster presentation at the Copenhagen Biosciences Conferences: Cell Factories and Biosustainability. Copenhagen, Denmark, May 5-8, 2013.
  • Anesiadis, N., Kobayashi, H., Cluett, W. R., Mahadevan, R. (2013, May) Reprogramming bacterial metabolism for optimal control of bioconversions. Oral presentation at the Statistics and Control Meeting, Kingston, ON
  • C. Gowen, S. Cautha, F.X. Lussier, N. Gold, V. Martin, R. Mahadevan. "Engineering a yeast platform strain for L-tyrosine production". Poster Presentation at the SIMB 36th Symposium on Biotechnology for Fuels and Chemicals, Portland, OR, April 29-May 2, 2013.
  • K. Correia, G. Vemuri, R. Mahadevan, “Modeling Pentose Metabolism of Scheffersomyces stipitis”, Pathway Tools Conference, Palo Alto, March 4 –March 6, 2013.
  • S. C. Chautha, V. Martin, F. X Lussier, N. Gold, C. Gowen, R. Mahadevan, “Ensemble Modeling of S. cerevisiae for Tyrosine Production”, 2013, Computer Applications in Biotechnology, Mumbai.
  • J. Zhao, R. Mahadevan. "Building Multi-scale Mechanistic Model for Assessing Uranium Bioremediation Performance under Significantly Different Conditions". Poster Presentation at the 112th General Meeting of American Society for Microbiology, San Francisco, June 16-19, 2012.
  • J. Zhao, C. Ho, E. Ma, K. Li, B. Methe and R. Mahadevan. "Pan-genome-scale Reconstruction of the Geobacteraceae Metabolic Network Based on Metagenome from Subsurface Samples". Poster Presentation at the Genomic Science Contractors-Grantees Meeting XI, Washington, February 24-27, 2013
  • P. Hyland, S. Mun, R. Mahadevan. "Predicting Weak Acid Toxicity using Genome-Scale Metabolic Models". Oral Presentation at the AIChE Annual Meeting, Pittsburgh PA, October 28 - November 2, 2012
  • S. Garg, V. G. Papangelakis, R. Mahadevan, E. Edwards, E. Krause, “Bioleaching of Pyrrhotite Tailings for Ni Extraction – Is it possible? Proceedings of the 51st Annual Conference of Metallurgists, Niagara Falls, ON, September 30- October 3, 2012.
  • S. Mun, P. Hyland, , R. Mahadevan. "Predicting Weak Acid Toxicity using Genome-Scale Metabolic Models". Poster Presentation at the Undergraduate Research Presentation, Toronto, August 2012.
  • J. Zhao, K. Zhuang, E. Ma, M. Barlett, G.Tartakovsky, A.Tartakovsky, Y. Fang, R. Mahadevan, T. Scheibe, and D. Lovley."Building a Multi-level Model Framework for Computer-aided Uranium Bioremediation Design". Poster Presentation at the US DoE SBR PI Annual Meeting, Washington DC, April 30-May 2, 2012.
  • F. Salimi, R. Mahadevan. "Metabolic characterization of a clostridial co-culture for cellulosic biobutanol production in a consolidated bioprocessing". Poster Presentation at the 34th Symposium on Biotechnology for Fuels and Chemicals, New Orleans, USA, April 30-May 3, 2012.
  • N. Anesiadis, W. R. Cluett, R. Mahadevan, “Model-driven design based on sensitivity analysis for a synthetic biology application”, Proceedings of the 21st European Symposium on Computer Aided Process Engineering, Chalkidiki, Greece.2011.
  • S. Chandra, V. Martin, R. Mahadevan. "Model-based design of S. cerevisiae for improved amino acid production". Oral Presentation at the CsChE Annual Meeting, London, ON, October 24-26, 2011.
  • E. Ma, K. Zhuang, R. Mahadevan. "Microbial Community Modeling and the Design of Effective Bioremediation Strategy". Oral Presentation at the CsChE Annual Meeting, London, ON, October 24-26, 2011.
  • H. C. Ho, C. Devine, E. Edwards, R. Beiko, R. Mahadevan. "Phylogenetic and Functional Analysis on an Anaerobic Benzene-degrading Community". Oral Presentation at the CsChE Annual Meeting, London, ON, October 24-26, 2011.
  • F. Salimi, R. Mahadevan. "Clostridial Co-culture for Cellulosic Biobutanol Production". Oral Presentation at the CsChE Annual Meeting, London, ON, October 24-26, 2011.
  • J. Zhao, R. Mahadevan. "Integrated Biogeochemical Modeling for Sustained Uranium Removal". Oral Presentation at the AIChE Annual Meeting, Minnesota, MN, October 17-20, 2011.
  • P. Gawand, R. Mahadevan. "Higher Order Gene Deletions Reveal Insights on the Role of Latent Pathways in E. coli". Oral Presentation at the AIChE Annual Meeting, Minnesota, MN, October 17-20, 2011.
  • N. Anesiadis, H. Koboyashi, S. Fong, W. R. Cluett, R. Mahadevan. "Dynamic Metabolic Engineering for Lactate Production". Oral Presentation at the AIChE Annual Meeting, Minnesota, MN, October 17-20, 2011.
  • S Garg, R.S. Giribaldi, V.G. Papangelakis and R. Mahadevan. "Comparing the Catalytic Influence of Two Iron Oxidizing Microbial Cultures". Poster presented at COM (Conference of Metallurgists) Annual Meeting, Montreal, QC, October 1-5, 2011
  • M. A. Islam, E. Edwards, and R. Mahadevan. A Systems-Level Study of the Transcriptional Changes of Dehalococcoides Metabolism. Poster at the Gordon Research Conference on Cellular Systems Biology, Davidson College, Davidson, North Carolina, July 24-30, 2011
  • L. Yang, William R. Cluett, R. Mahadevan. “Genome-scale robust strain design,” Poster presentation at Biochemical and Molecular Engineering XVII, Seattle, Washington, June 26-30, 2011.
  • M.A. Islam, E. Edwards, R. Mahadevan. “New Insights into Dehalococcoides Metabolism from an Integrated Metabolic Transcriptomics Study,” Poster presentation at Biochemical and Molecular Engineering XVII, Seattle, Washington, June 26-30, 2011.
  • N. Bourdakos, R. Mahadevan. "Defined Consortia for the Degradation of Complex Wastes in Microbial Fuel Cells." Poster at 3rd International Microbial Fuel Cell Conference 2011, Wetsus Centre of Excellence for Sustainable Water Technology, Leeuwarden, the Netherlands, June 6-8th, 2011.
  • S. Chandra, R. Mahadevan. "Ensemble Modeling of S. cerevisiae", Poster at 111th General Meeting American Society for Microbiology, New Orleans, Louisiana, May 21-24, 2011.
  • V. E. Balderas-Hernandez, J. Usher, K. Baetz, S. Gleddie, A. Johnston, L. Harris, R. Mahadevan. “Ethanol Production By A Xylose Fermenting Saccharomyces cerevisiae Using Wheat Straw Hydrolysate”, Poster at 111th General Meeting American Society for Microbiology, New Orleans, Louisiana, May 21-24, 2011.
  • Kai Zhuang, G. Vemuri, R. Mahadevan. "Economics of Membrane Occupancy and the Respiro-fermentation". Poster at 111th General Meeting American Society for Microbiology, New Orleans, Louisiana, May 21-24, 2011.
  • Kai Zhuang, E. Ma, R. Mahadevan. "Dynamic community modelling of uranium bioremediation." Poster at 111th General Meeting American Society for Microbiology, New Orleans, Louisiana, May 21-24, 2011.
  • Jiao Zhao, K. Zhuang, E. Ma, H. Richter, M. Barlett, Y. Fang, R. Mahadevan, T. Scheibe, and D. Lovley. "Detailed Modeling of Subsurface Microbes and Interaction between Microbial and Hydrogeochemical Process for Sustained Uranium Removal." Poster at the US DoE SBR PI Annual Meeting, Washington DC, April 26-28th 2011.
  • Kai Zhuang, M. Barlett, E. Ma, D. Lovley, R. Mahadevan. " Modeling Community Metabolism during Uranium Bioremediation." Poster at the US DoE SBR PI Annual Meeting, Washington DC, April 26-28th 2011.
  • Laurence Yang, William R. Cluett, R. Mahadevan. “Efficient Redesign of Metabolism for Biochemicals,” Oral presentation at the 2011 IBE Annual Conference, Atlanta, Georgia, March 3-5, 2011.
  • L. Yang, R. Mahadevan and W. R. Cluett, “Rapid Design of System-wide Metabolic Network Modifications using Iterative Linear Programming”, Proceedings of the 2010 DYCOPS conference, Belgium. (Selected as a Keynote Presentation)
  • Kai Zhuang, E. Ma, R. Mahadevan. "Dynamic community modelling of uranium bioremediation." Oral Presentation at the AIChE Annual Meeting, Salt Lake City, 2010
  • Kai Zhuang, G. Vemuri, R. Mahadevan. "Economics of Membrane Occupancy and the Respiro-fermentation". Oral Presentation at the AIChE Annual Meeting, Salt Lake City, 2010.
  • N. Jayasinghe, R. Mahadevan, “Metabolic Modeling of Spatial Heterogeneity of Biofilms in Microbial Fuel Cells”, Proceedings of the 2010 Conference on Computer Applications in Biotechnology, Belgium.
  • L. Yang, W. R. Cluett, R. Mahadevan. “Scalable and Highly Efficient Computational Algorithm for Metabolic Engineering,” Poster at Metabolic Engineering VIII, Jeju Island, South Korea, June 14th, 2010.
  • P. Gawand, P. Hyland, R. Mahadevan, “Metabolic Engineering Strategies for Substrate Co-utilization in E. coli”, Poster at Metabolic Engineering Conference VIII, Jeju Island, South Korea, June 13th, 2010 (Selected as the Biotechnology and Bioengineering Best Poster Award).
  • F. Salimi, R. Mandal, D. Wishart, R. Mahadevan, “Understanding Clostridium acetobutylicum ATCC 824 Metabolism Using Genome-Scale Thermodynamics and Metabolomics-based Modeling”, Proceedings of the 2010 Conference on Computer Applications in Biotechnology, Belgium.
  • V. Pandit, R. Mahadevan, “Electrical Enhancement of E. coli for Succinate Production”, Poster at 12th Canadian Society for Chemical Engineering Ontario-Quebec Biotechnology Meeting, Montreal, Canada, June 3rd, 2010.
  • F. Salimi, K. Zhuang, R. Mahadevan, "Genome-Scale Characterization of Metabolic Potential of Solventogenic and Cellulolytic Clostridia", Poster at 12th Canadian Society for Chemical Engineering Ontario-Quebec Biotechnology Meeting, Montreal, Canada, June 3rd, 2010.
  • N. Bourdakos, R. Mahadevan. "Defined Consortia for the Degradation of Complex Wastes in Microbial Fuel Cells", Poster at 12th Canadian Society for Chemical Engineering Ontario-Quebec Biotechnology Meeting, Montreal, Canada, June 3rd, 2010.
  • L. Yang, R. Mahadevan and W. R. Cluett, “Designing Experiments from Noisy Metabolomics Data to Refine Constraint-based Models”, American Control Conference, Boston, U.S.A, 2010. (Selected as the Best Presentation in the Session)
  • P.Y. Li, R. Mahadevan, “PichCyc: An Extensible Database for Model Based Analysis of P. stipitis Metabolism”, Poster at 12th Canadian Society for Chemical Engineering Ontario Quebec Biotechnology Meeting, Montreal, Canada, June 3rd, 2010.
  • F. Salimi, K. Zhuang, R. Mahadevan, "Genome-Scale Characterization of Metabolic Potential of Solventogenic and Cellulolytic Clostridia", Poster at 110th American Society of Microbiology Annual General Meeting, San Diego, USA. May 26th, 2010.
  • J. Zhao, Y. Fang, T. Scheibe, D. Lovley, R. Mahadevan , “Systematic Investigation of Critical Parameters Involved in a Geobacter-mediated Bioremediation Model by Global Sensitivity Analysis”, Poster at 110th General Meeting of the American Society for Microbiology, San Diego, USA, May 26th, 2010.
  • N. Jayasinghe, D. Lovley, A. Franks, R. Mahadevan, “Metabolic Modeling of Spatial Heterogeneities of Biofilms in Microbial Fuel Cells”, Poster at 110th General Meeting of the American Society for Microbiology, San Diego, USA, May 25th, 2010.
  • J. Zhao, S. Garg, K. Zhuang, R. Mahadevan, Y. Fang, T. Scheibe, D. Lovley, “BUGS Modeling: Integrating Dynamic Genome-Based Metabolic Models with Reactive Transport Models to Predict the Fate of Contaminants in the Subsurface”, Poster at the DoE ERSP Annual Workshop, Leesburg, VA, March, 2010.
  • K. Zhuang, J. Zhao, N. Jayasinghe, J. Sun, T. Hoon, C. Risso, D. Lovley, R. Mahadevan, “Dynamic Genome-based Models for Simulating Microbial Ecology”, Poster at US Department of Energy’s Genomic Sciences Workshop, February 8th, 2010, Bethesda, MD.
  • N. Anesiadis, W.R. Cluett, R. Mahadevan, “Sensitivity Analysis of a Dynamic Genetic Controller for Metabolic Engineering”, Poster at Society of Industrial Microbiology Annual Meeting, Toronto, Canada, July 28th, 2009.
  • Islam, E. Edwards, R. Mahadevan, “A Genome-scale Global Metabolic Model of Dehalococcoides Species”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  • K. Zhuang, D. Lovley, R. Mahadevan, “Dynamic Modeling of the Ecology of Desulfovibrio vulgaris, Geobacter sulfurreducens and Acetate Oxidizing Sulfate Reducers”, Proceedings of the 2009 Foundations of Systems Biology in Engineering Conference, Englewood, CO.
  • Risso, J. Sun, K. Zhuang, R. Mahadevan, O. Bui, R. DeBoy, W. Ismael, C. H. Schilling, B. A. Methe, and D. R. Lovley, “Unraveling the Physiology of Rhodoferax ferrireducens with In silico Modeling”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  • S. Garg, T. Scheibe, Y. Fang, D. Lovley, and R. Mahadevan, “Coupling a Genome-Scale Metabolic Model with a Reactive Transport Model to Describe in situ Uranium Bioremediation”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  • J, Zhao, T Scheibe, Y. Fang, D. Lovley, and R. Mahadevan “Characterization of Geobacter-Mediated Bioremediation by Modeling Electron Capacitance”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  • M. Izallalen, S. M. FitzPatrick, J. Nguyen, R. Mahadevan, K. P. Nevin, J. Sun, and D. R. Lovley, “Engineering Geobacter sulfurreducens to Convert Glycerol to Electricity”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  • Y. Qu, R. M. Adkins, R. Mahadevan, D. R. Lovley, and J. Krushkal, “Computational Pipeline for Analyses of Variation in Regulatory Organization among Phylogenetically Closely Related Microorganisms”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  • K. Zhuang, D. Lovley, and R. Mahadevan, “Dynamic Modeling of a Microbial Community of Desulfovibrio vulgaris, Geobacter sulfurreducens and Acetate-oxidizing Sulfate-reducing Bacteria Related to Uranium Bioremediation”, Poster at the ASM Annual Meeting, Philadelphia, PA, May, 2009.
  • J. Zhao, S. Garg, K. Zhuang, R. Mahadevan, Y. Fang, T. Scheibe, D. Lovley, “Coupling In Silico Microbial Community Models with Reactive Transport Models to Predict the Fate of Contaminants in the Subsurface”, Poster at the DoE ERSP Annual Workshop, Leesburg, VA, April, 2009.
  • K. Zhuang, R. Mahadevan, J. Sun, Y. Fang, T. Scheibe, C. Risso, H. Richter, and D. Lovley, Dynamic Genome-scale Modeling of Geobacter species in Subsurface Environments, Poster at the DoE GtL Annual Workshop, Washington DC, February, 2009.
  • Zhao, J, Fang, Y, Scheibe, TD, Lovley, DR and Mahadevan, R. “Effect of Electron Capacitance on Geobacter Growth and Metal Reduction in Subsurface”, Poster at the American Geophysical Union, Fall Meeting 2008, San Francisco, CA, December 2008.
  • J. Krushkal, M. Puljic, B. Yan, J. F. Barbe, R. Mahadevan, B. Postier, R. A. O'Neil**, G. Reguera, C. Leang, L. N. DiDonato, C. Núñez, B. A. Methé, R. M. Adkins, and D. R. Lovley. Genome regions involved in multiple regulatory pathways identified using GSEL, a genome-wide database of regulatory sequence elements of Geobacter sulfurreducens. IEEE Proceedings, 2008 International Conference on BioMedical Engineering and Informatics (BMEI 2008).
  • K. Zhuang, D. Lovley, R. Mahadevan, “Dynamic Modeling of Community Competition in Uranium Contaminated Sub-surface Environments”, Oral Presentation at the AIChE Annual Meeting, Philadelphia, November, 2008.
  • L. Yang, W. R. Cluett, R. Mahadevan, “Investigating Metabolite Turnover Rates using Constraint-based Models of Metabolism”, Poster Presentation at the AIChE Annual Meeting, Philadelphia, November, 2008.
  • Islam, E. Edwards, R. Mahadevan, “Genome-scale Constraint-based Modeling of Dehalococcoides species for Reductive Dechlorination”, Oral Presentation at the CsChE Annual Meeting, Ottawa, October, 2008.
  • N. Anesiadis, W. R. Cluett, R. Mahadevan, “Dynamic Control of Gene Expression for Succinate Overproduction”,Oral Presentation at the CsChE Annual Meeting, Ottawa, October, 2008.
  • K. Zhuang, M. Izallalen, D. R. Lovley , R. Mahadevan, “Dynamic Multi-species Metabolic Modeling for Analyzing Microbial Community Function during In situ Uranium Remediation”, Poster Presentation at the International Society of Microbial Ecology Conference, Cairns, Australia, August, 2008.
  • Y. Fang, S. Garg, D Lovley, R Mahadevan, T. Scheibe, “Integrated Model of Hydrology, Geochemistry, and Metabolism for Optimizing Bioremediation in Sub-surface Environments”, Oral Presentation at the Pacific AGU Meeting Cairns, Australia, August, 2008.
  • S. Garg, Y. Fang, T. Scheibe, D Lovley, R Mahadevan, “Integrated Model of Hydrology, Geochemistry, and Metabolism for Optimizing Bioremediation in Sub-surface Environments”, Oral Presentation at the Computational Methods in Water Resources Conference, San Francisco, July 2008.
  • K. Srinivasan , D. Lovley, R. Mahadevan, “Model-Based Analysis of Proton Production and Consumption during Growth of Geobacter Species and Escherichia coli”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  • Sayyar, D. Lovley, R. Mahadevan, “Thermodynamic Electron Equivalent Models of Geobacter Species”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  • Islam, E. Edwards, R. Mahadevan, “Genome-Scale in Silico Metabolic Modeling of Dehalococcoides sp. Strain CBDB1”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  • J. Sun, B. Sayyar, K. Srinivasan, D. Lovley, R. Mahadevan, “Genome-Scale Constraint-Based Modeling of Geobacter metallireducens”, Poster at the ASM Annual Meeting, Boston, ON, June 2008.
  • L. Yang, W. R. Cluett and R. Mahadevan, Fitness Profiles based Identification of Enzyme Capacities in E. coli, Poster at Genome Biology and Bioinformatics Regional Workshop, ON, May 2008.
  • K. Srinivasan, D. Lovley, R. Mahadevan, “Model-Based Analysis of Proton Production and Consumption during Growth of Geobacter Species and Escherichia coli”, Poster at Genome Biology and Bioinformatics Regional Workshop, ON, May 2008.
  • Islam, E. Edwards, R. Mahadevan, “Genome-Scale in silico Metabolic Modeling of Dehalococcoides sp. Strain CBDB1, Poster at Genome Biology and Bioinformatics Regional Workshop, ON, May 2008.
  • S. Garg, K. Zhuang, R. Mahadevan, Y. Fang, T. Scheibe, D. Lovley, Coupling In silico Microbial Models with Reactive Transport Models to Predict the Fate of Contaminants in the Subsurface, Poster at the DoE ERSP Annual Workshop, Leesburg, VA, April, 2008.
  • J. Sun , K. Zhuang, K. Srinivasan, R. Mahadevan, O. Bui, T. Fahland, I. Famili, M. Izallalen, C. Risso, S. Haveman, C. Schilling, and D. Lovley, Computational modeling of central metabolism of Geobacter and related species, Poster at the DoE GtL Annual Workshop, Washington DC, February, 2008.
  • L. Yang, W. R. Cluett and R. Mahadevan, Fitness Profiles Identify Enzyme Capacities, Poster at the International Conference on Systems Biology, Long Beach, CA, October, 2007.
  • J. L. Hjersted, M.A. Henson, and R. Mahadevan, “Validation of a Saccharomyces cerevisiae dynamic flux balance model and analysis of metabolism and ethanol production in fed-batch culture”, Proceedings of the 2007 Foundations of Systems Biology in Engineering Conference, Stuttgart, Germany.
  • K. Zhuang, M. Izallalen, D. R. Lovley, R. Mahadevan, Race to Domination: A community competition study of Escherichia coli, Geobacter sulfurreducens, and Rhodoferax ferrireducens, Poster at the International Conference on Systems Biology, Long Beach, CA, October, 2007.
  • L. Yang, W. R. Cluett and R. Mahadevan, “A Bilevel Optimization Algorithm to Identify Enzymatic Capacity Constraints in Metabolic Networks”, Poster at the Biochemical Engineering Conference XV, Quebec City, QC, July 2007.
  • N. Anesiadis, W. R. Cluett, R. Mahadevan, Dynamic Control of Gene Expression to Optimize Product Formation in Escherichia coli, Poster at the Genome Biology and Bioinformatics Regional Workshop, ON, June 2007.
  • K. Zhuang, M. Izallalen, D. R. Lovley, R. Mahadevan, Dynamic Modeling of a Glucose oxidizing, Fe(III) reducing coculture of Geobacter sulfurreducens and Escherichia coli. Oral Presentation at the CsChE Annual Ontario-Quebec Biotechnology Meeting, Toronto, ON, June 2007.
  • Sayyar, K. Srinivasan, R. Mahadevan, Analysis of the energetics of G. metallireducens, Poster at the CsChE Annual Ontario-Quebec Biotechnology Meeting, Toronto, ON, June 2007
  • K. Zhuang, M. Izallalen, D. R. Lovley, R. Mahadevan, Dynamic Modeling of a Glucose oxidizing, Fe(III) reducing coculture of Geobacter sulfurreducens and Escherichia coli. Poster at the ASM Annual Meeting, Toronto, ON, May 2007.
  • R. Mahadevan, and D. R. Lovley, Analysis of Degree of Genetic Redundancy in Prokaryotic Metabolic Networks. Poster at the ASM Annual Meeting, Toronto, ON, May 2007.
  • N. Anesiadis, W. R. Cluett, R. Mahadevan, Dynamic Control of Gene Expression to Optimize Product Formation in Escherichia coli, Oral Presentation at the ASM Conference on Integrating Metabolism and Genomics (IMAGE), Montreal, May, 2007.
  • N. Anesiadis, W. R. Cluett, R. Mahadevan, Dynamic Control of Gene Expression to Optimize Product Formation in Escherichia coli, Oral Presentation at the Statistics and Control Meeting, McMaster University, Hamilton, Ontario, May, 2007.
  • R. Mahadevan, and D. R. Lovley, Analysis of Genetic Redundancy in Bacterial Metabolic Networks. Poster at the DoE Genomics:GtL Conference, Washington D.C., February, 2007
  • R. Mahadevan, D. Segura, and D. R. Lovley, “Analysis of Redundancy in Central Metabolism of G. sulfurreducens”, Oral Presentation at the AIChE Annual Meeting, San Francisco, November 2006.
  • M. A. Henson, J. Hjersted and R. Mahadevan, “Dynamic Flux Balance Analysis of Yeast Primary Metabolism in Fed-Batch Culture”, Oral Presentation at the AIChE Annual Meeting, San Francisco, November 2006.
  • R. Mahadevan, M. Izallalen, D. R. Lovley, In silico Analysis of Metabolic Interactions in Fe(III) reducing/Electricity Generating Community. Poster at the Gordon Research Conference in Ecology, Lewiston, ME, 2006.
  • M. Puljic, B. Yan, R. M. Adkins, R. Mahadevan, D. R. Lovley, J. Krushkal, Computational Approaches to Identifying Common Regulatory Genome Elements Affecting Regulatory Networks of G. sulfurreducens. Poster at the ASM Annual Meeting, Orlando, FL, June 2006.
  • R. Mahadevan, A. Esteve-Nunez, D.R. Bond, and D. R. Lovley, “Constraint-based modeling of the Fe(III) reducing bacteria, Geobacter sulfurreducens, Proceedings of the 2006 Systems Biology Conference, Madrid, Spain.
  • M.V. Coppi, R. Mahadevan, S. J. Van Dien, D. G. Segura-Gonzalez, D. R. Lovley, Flux Analysis of G. sulfurreducens Central Metabolism. Poster at the ASM Annual Meeting, Orlando, FL, June 2006.
  • M. Izallalen, R. Mahadevan, B. L. Postier, R. J. DiDonato, Jr., D. R. Lovley, Genome-Wide Expression Analysis of Geobacter sulfurreducens Strain Engineered for Increased Rates of Respiration. Poster at the ASM Annual Meeting, Orlando, FL, June 2006.
  • R. Mahadevan, M. Coppi, D. Segura, S Van Dien, B Palsson, C Schilling, A Esteve-Nunez, M Izallalen, and D Lovley, In Silico Modeling of the Growth and Physiological Responses of Geobacteraceae in Complex Environments. Poster at the DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  • R. Mahadevan, T. Fahland, Y. Kwan, J.D. Trawick, I. Famili, and C.H. Schilling, Integrated Computational and Experimental Approaches to Facilitated Model Development. Poster at the DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  • R. Mahadevan, M. Coppi, D. Segura, S Van Dien, B Palsson, C Schilling, A Esteve-Nunez, M Izallalen, and D Lovley, In silico Modeling of the Growth and Physiological Responses of Geobacteraceae in Complex Environments. Poster at the DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  • J. Krushkal, M. Puljic, R. M. Adkins, J. Peeples, B. Yan, R. Mahadevan, and D. R. Lovley, Computational Approaches to Investigating Transcription Regulatory Networks and Molecular Evolution of the Metal-Reducing Family Geobacteraceae. Poster at the DoE Genomics:GtL Conference, Washington D.C., February, 2006.
  • M. A. Henson, J. Hjersted and R. Mahadevan, “Dynamic Flux Balance Analysis of Yeast Primary Metabolism in Fed-Batch Culture”, Oral Presentation at the AIChE Annual Meeting, Cincinnati, November 2005.
  • K. G. Gadkar, R. Mahadevan, F. J. Doyle III, “Batch control of genetic alterations for optimal metabolic engineering”, American Control Conference, 2005, Portland, U.S.A.
  • R. Vadigepalli, and R. Mahadevan, “A Multi-cellular Dynamic Model of Neuron-Astrocyte Metabolic Interactions in the Brain”, Oral Presentation at the AIChE Annual Meeting, Cincinnati, November 2005.
  • R. Mahadevan, M. Izallalen, C. H. Schilling, A. P. Burgard, and D. R. Lovley, “Engineering Geobacter Metabolism for Enhanced Electricity Generation”, Oral Presentation at the AIChE Annual Meeting, Cincinnati, November 2005.
  • R. Mahadevan, B. Yan, J. Krushkal, and D. R. Lovley, “Reconstruction of the Regulatory Network of Geobacter sulfurreducens from Gene Expression Data and Sequence Analysis”, Poster at the ASM Annual Meeting, Atlanta, GA, June 2005.
  • R. Mahadevan, D. Segura, and D. R. Lovley, “Integrated Analysis of Integrated analysis of central metabolism mutants in Geobacter sulfurreducens”, Poster at the ASM Annual Meeting, Atlanta, GA, June 2005.
  • M. Izallalen, R. Mahadevan, C.H. Schilling and D. R. Lovley, “Engineering Geobacter metabolism for augmentation of electron transfer rate”, Poster at the ASM Annual Meeting, Atlanta, GA, June 2005.
  • R. Mahadevan, B. Yan, J. Krushkal, D. Segura, D. R. Lovley, and C. H. Schilling, “Integrating Phenotypic and Expression Data to Characterize Metabolism in Geobacter sulfurreducens”, Poster at the Department of Energy Workshop on Genomes to Life Projects, February, 2005.
  • R. Mahadevan, D. R. Lovley, D. Bond and C. H. Schilling, “Model-driven Discovery of Novel Biological Mechanisms in the Metabolism of Geobacter sulfurreducens”, Oral Presentation at the AIChE Annual Meeting, Austin, November 2004.
  • K.G. Gadkar, R. Mahadevan, F. J. Doyle III, and J. S. Edwards, “Estimating Optimal Induction Times of Genetic Alterations using Constraint-based Models”, Oral Presentation at the AIChE Annual Meeting, Austin, November 2004.
  • R. Mahadevan, D. R. Bond, J. E. Butler, M. V. Coppi, A. Esteve-Nuñez, D. R. Lovley, and C. H. Schilling, “Model-driven Discovery of Novel Biological Mechanisms in the Metabolism of Geobacter sulfurreducens”, Poster at the ASM Annual Meeting, Washington, DC, May 2004.
  • R. Mahadevan and F. J. Doyle III, “Partial Flatness based Approach to Nonlinear Moving Horizon Estimation”, American Control Conference, Boston, U.S.A, 2004.
  • K.G. Gadkar, R. Mahadevan, F. J. Doyle III, and J. S. Edwards, “Estimating Optimal Induction Times of Genetic Alterations using Constraint-based Models”, Poster at International Conference on Systems Biology, St. Louis, MO, November 2003.
  • R. Mahadevan, B. O. Palsson, and C. H. Schilling, “Effects of Alternate Optimal Solutions in Constraint-based Genome Scale Metabolic Models”, Oral Presentation at the AIChE Annual Meeting, San Francisco, November 2003.
  • R. Mahadevan, D. R. Bond, J. E. Butler, A. Esteve-Nuñez, D. R. Lovley, and C. H. Schilling, “Genome scale Metabolic Model of Geobacter sulfurreducens”, Poster at the ASM Annual Meeting, Washington, DC, May 2003.
  • Nuñez, B. Methe, A. Esteve-Nuñez, C. S. Giometti, R. Mahadevan, C. H. Schilling, and D.R. Lovley. “Functional Genomics and Proteomics Analysis: Defining the RpoS Regulon in Geobacter sulfurreducens”, Poster at the ASM Annual Meeting, Washington, DC, May 2003.
  • H. Schilling, R. Mahadevan, S. Park, E. Travnik, B. Palsson, C. Maranas, D. Lovley, and D. Bond, “SimPheny: A Computational Infrastructure Bringing Genomes to Life”, Poster at the Department of Energy Workshop on Genomes to Life Projects, February, 2003.
  • Lovley, M. Coppi, D. Bond, J. Butler, S. Childers, T. Mehta, C. Leang, B. Methe, C. Giometti, R. Mahadevan, C.H. Schilling, B. Palsson, “Microbial Cell Model of G. sulfurreducens: Integration of in silico Models and Functional Genomic Studies”, Poster at the Department of Energy Workshop on Genomes to Life Projects, February, 2003.
  • R. Mahadevan, J. S. Edwards and F. J. Doyle III, “Dynamic Flux Analysis of Diauxic Growth in Escherichia coli”, Oral Presentation at the AIChE Annual Meeting, Indianapolis, IN, November 2002.
  • K. Pathak, R. Mahadevan and S. K. Agrawal, “Model Reformulation Schemes in Dynamic Optimization: A Numerical Study of the Flexible Link”, Proceedings of NATO-ASI Workshop on Virtual Nonlinear Multibody systems, Prague, Czech Republic, 2002.
  • R. Mahadevan and F. J. Doyle III, “Optimization of a Fed-batch Bioreactor based on State Transformations”, Oral Presentation at the AIChE Annual Meeting, Reno, NV, November 2001.
  • R. Mahadevan and F. J. Doyle III, “Control Education by Coupling Software and Laboratory Experiments”, Poster at the AIChE Annual Meeting, Reno, NV, November 2001.
  • R. Mahadevan and F. J. Doyle III, “Optimization of a Fed-batch Bioreactor based on State Transformations”, Topical Conference on Bioinformatics and Genomics at the AIChE Annual Meeting, Reno, NV, November 2001.
  • R. Mahadevan, J. S. Edwards and F. J. Doyle III, “Dynamic Flux Balance Analysis for Metabolic Modeling”, Poster at International Conference on Systems Biology, Pasadena, CA, November 2001.
  • R. Mahadevan and F. J. Doyle III, “A Flatness based Approach to On-line Optimization of Fed-batch Bioreactors”, Oral Presentation at the AIChE Annual Meeting, Los Angeles, CA, November 2000.
  • R. Mahadevan, A. Allcock, and F. J. Doyle III, “Control-Relevant Scheduling of Grade Transitions in Polymerization Reactor”, Oral Presentation at the AIChE Annual Meeting, Los Angeles, CA, November 2000.
  • R. Mahadevan, E. P. Gatzke, and F. J. Doyle III, “Advanced Control Education through the Integration of Laboratory Experiments and Simulation”, Poster at the AIChE Annual Meeting, Los Angeles, CA, November 2000.
  • R. Mahadevan, R. Vadigepalli and F. J. Doyle III, “Integrating Experiments with Theory in Control Education with the Four-tank Process” Poster at the IFAC Symposium on Advanced Control of Chemical Processes, Pisa, Italy, June 2000.
  • R. Mahadevan and F. J. Doyle III, “Optimization and Control of Bioreactors”, Poster at MABEC Annual Meeting, Newark, DE, April 2000.
  • J. Doyle III, K. Troutman, E. S. Meadows, E. P. Gatzke, R. Vadigepalli, R. Mahadevan, G. Whitmyre, G. Stoole, and P. Richards, “Innovative Control Education Using a 4-Tank Experiment and the WWW”, IFAC/IEEE Symposium on Advances in Control Education, Gold Coast, Australia, December 2000.
  • R. Mahadevan, S. K. Agrawal, and F. J. Doyle III, “Flatness based Approach to Optimization of Fed-batch Bioreactors”, IFAC Symposium on Advanced Control of Chemical Processes, Pisa, Italy, 2000, 111-116.
  • R. Mahadevan, E. P. Gatzke , and F. J. Doyle III, “Merging Laboratory Experiments with Software Experiments”, Poster at the AIChE Annual Meeting, Dallas, November 1999.
  • R. Mahadevan and F. J. Doyle III, “Nonlinear Nonsquare Control of a Continuous Bioreactor using Flat Outputs”, European Control Conference, Karlsruhe, Germany, 1999, 416-422.