Click here for Prof. Mahadevan's Google Scholar page.

• Z. Xu, J. Wu, Y. S. Song, R. Mahadevan, "Enzyme activity prediction of sequence variants on novel substrates using improved substrate encodings and convolutional pooling", Spotlight paper at Machine Learning in Computational Biology, virtually held, November 2021. Click here.
• K. Kadam, C.E. Euler, R. Mahadevan, "Evaluating the performance of a post-translational dynamic metabolic control system", Proceedings of the Foundations in Systems Biology Conference, Valencia, Spain, October 2019. Click here.
• C.E. Euler, R. Mahadevan, “Protein-Level Control of Metabolism: Design Principles and Prospects from a Representative System", Proceedings of the Foundations in Systems Biology Conference, Magdeburg, Germany, October 2016. Click here.
• M.K.Toroghi, W. Cluett, R. Mahadevan, “A Multi-Scale Model of the Whole Human Body based on Dynamic Parsimonious Flux Balance Analysis”, (Invited Keynote Presentation). Proceedings of 11th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, (DYCOPS-CAB 2016), Trondheim, Norway, June 5-8, 2016. Click here.
• S.Garg, V.G. Papangelakis, C. Devine, R. Mahadevan, E. Edwards, Bioleaching of pyrrhotite tailings for Ni extraction- insights into an adaptive evolution study. Proceedings of the 54th Annual Conference of Metallurgists, Toronto, ON, August 23- August 26, 2015. Click here.
• S. Chautha, V. Martin, F. X Lussier, N. Gold, C. Gowen, R. Mahadevan, “Model-driven design of a Saccharomyces cerevisiae platform strain with improved tyrosine production capabilities”, 2013, Computer Applications in Biotechnology, Mumbai. Click here.
• S. Garg, V. G. Papangelakis, R. Mahadevan, E. Edwards, E. Krause, “Bioleaching of Pyrrhotite Tailings for Ni Extraction – Is it possible? Proceedings of the 51^st Annual Conference of Metallurgists, Niagara Falls, ON, September 30- October 3, 2012.
• N. Anesiadis, W. R. Cluett, R. Mahadevan, “Model-driven design based on sensitivity analysis for a synthetic biology application”, Proceedings of the 21st European Symposium on Computer Aided Process Engineering, Chalkidiki, Greece.2011. Click here.
• L. Yang, R. Mahadevan and W. R. Cluett, “Rapid Design of System-wide Metabolic Network Modifications using Iterative Linear Programming”, Proceedings of the 2010 DYCOPS conference, Belgium. (Selected as a Keynote Presentation). Click here.
• N. Jayasinghe, R. Mahadevan, “Metabolic Modeling of Spatial Heterogeneity of Biofilms in Microbial Fuel Cells”, Proceedings of the 2010 Conference on Computer Applications in Biotechnology, Belgium. Click here.
• F. Salimi, R. Mandal, D. Wishart, R. Mahadevan, “Understanding Clostridium acetobutylicum ATCC 824 Metabolism Using Genome-Scale Thermodynamics and Metabolomics-based Modeling”, Proceedings of the 2010 Conference on Computer Applications in Biotechnology, Belgium. Click here.
• L. Yang, R. Mahadevan and W. R. Cluett, “Designing Experiments from Noisy Metabolomics Data to Refine Constraint-based Models”, American Control Conference, Boston, U.S.A, 2010. (Selected as the Best Presentation in the Session). Click here.
• K. Zhuang, D. Lovley, R. Mahadevan, “Dynamic Modeling of the Ecology of Desulfovibrio vulgaris, Geobacter sulfurreducens and Acetate Oxidizing Sulfate Reducers”, Proceedings of the 2009 Foundations of Systems Biology in Engineering Conference, Englewood, CO. Click here.
• J. Krushkal, M. Puljic, B. Yan, J. F. Barbe, R. Mahadevan, B. Postier, R. A. O'Neil**, G. Reguera, C. Leang, L. N. DiDonato, C. Núñez, B. A. Methé, R. M. Adkins, and D. R. Lovley. Genome regions involved in multiple regulatory pathways identified using GSEL, a genome-wide database of regulatory sequence elements of Geobacter sulfurreducens. IEEE Proceedings, 2008 International Conference on BioMedical Engineering and Informatics (BMEI 2008). Click here.
• J. L. Hjersted, M.A. Henson, and R. Mahadevan, “Validation of a Saccharomyces cerevisiae dynamic flux balance model and analysis of metabolism and ethanol production in fed-batch culture”, Proceedings of the 2007 Foundations of Systems Biology in Engineering Conference, Stuttgart, Germany.
• R. Mahadevan, A. Esteve-Nunez, D.R. Bond, and D. R. Lovley, “Constraint-based modeling of the Fe(III) reducing bacteria, Geobacter sulfurreducens, Proceedings of the 2006 Systems Biology Conference, Madrid, Spain.
• K. G. Gadkar, R. Mahadevan, F. J. Doyle III, “Batch control of genetic alterations for optimal metabolic engineering”, American Control Conference, 2005, Portland, U.S.A.
• R. Mahadevan and F. J. Doyle III, “Partial Flatness based Approach to Nonlinear Moving Horizon Estimation”, American Control Conference, Boston, U.S.A, 2004.
• K. Pathak, R. Mahadevan and S. K. Agrawal, “Model Reformulation Schemes in Dynamic Optimization: A Numerical Study of the Flexible Link”, Proceedings of NATO-ASI Workshop on Virtual Nonlinear Multibody systems, Prague, Czech Republic, 2002.
• R. Mahadevan and F. J. Doyle III, “Optimization of a Fed-batch Bioreactor based on State Transformations”, Topical Conference on Bioinformatics and Genomics at the AIChE Annual Meeting, Reno, NV, November 2001.
• F. J. Doyle III, K. Troutman, E. S. Meadows, E. P. Gatzke, R. Vadigepalli, R. Mahadevan, G. Whitmyre, G. Stoole, and P. Richards, “Innovative Control Education Using a 4-Tank Experiment and the WWW”, IFAC/IEEE Symposium on Advances in Control Education, Gold Coast, Australia, December 2000.
• R. Mahadevan, S. K. Agrawal, and F. J. Doyle III, “Flatness based Approach to Optimization of Fed-batch Bioreactors”, IFAC Symposium on Advanced Control of Chemical Processes, Pisa, Italy, 2000, 111-116.
• R. Mahadevan and F. J. Doyle III, “Nonlinear Nonsquare Control of a Continuous Bioreactor using Flat Outputs”, European Control Conference, Karlsruhe, Germany, 1999, 416-422.